Build workflow (DigitalSlideArchive/HistomicsTK)

name: Build
 
on:
  push:
  # pull_request:
  #   branches:
  #     - master
  release:
    types:
      - created
  # schedule:
  #   - cron: "0 7 * * 1"
 
concurrency:
  group: ${{ github.ref }}
  cancel-in-progress: ${{ github.ref != 'refs/heads/master' }}
 
jobs:
  test:
    timeout-minutes: 30
    runs-on: latchkey-small
    # Runs can be slow, so don't use resources unless we mean to publish
    if: github.repository == 'DigitalSlideArchive/HistomicsTK' && ( startsWith(github.ref, 'refs/tags/v') || github.ref == 'refs/heads/master' )
    strategy:
      matrix:
        python: ["3.10", "3.11", "3.12", "3.13", "3.14"]
    steps:
      - uses: actions/checkout@v7
      - uses: actions/setup-python@v6
        with:
          cache: 'pip'
          python-version: ${{ matrix.python }}
      - name: Install tox
        run: |
          pip install --upgrade pip
          pip install tox tox-gh-actions
      - name: Run tox
        env:
          PYTEST_ADDOPTS: "--durations=0 -vv"
        run: |
          tox
  lint:
    timeout-minutes: 30
    runs-on: latchkey-small
    steps:
      - uses: actions/checkout@v7
      - uses: actions/setup-python@v6
        with:
          cache: 'pip'
          python-version: "3.11"
      - uses: nikeee/setup-pandoc@v1
      - name: Install tox
        run: |
          pip install --upgrade pip
          pip install tox
      - name: Run tox for lint and docs
        run: |
          tox -e lint,docs
      - uses: actions/upload-artifact@v7
        with:
          name: docs
          path: ./docs/_build
  build_wheels:
    timeout-minutes: 30
    name: Wheels for ${{ matrix.python }} / ${{ matrix.buildplat[0] }} / ${{ matrix.buildplat[1] }}
    runs-on: ${{ matrix.buildplat[0] }}
    # Don't build external PRs.
    if: github.repository == 'DigitalSlideArchive/HistomicsTK'
    strategy:
      matrix:
        # See matplotlib for some of the rationale of this
        buildplat:
          - [ubuntu-latest, "x86_64 aarch64"]
          - [macos-latest, "x86_64 arm64"]
          - [windows-latest, auto64]
        python: ["cp310", "cp311", "cp312", "cp313", "cp314"]
      fail-fast: false
 
    steps:
      - uses: actions/checkout@v7
        with:
          fetch-depth: 0
          fetch-tags: true
      - run: git status && git tag --list && pwd
      - uses: actions/setup-python@v6
        with:
          cache: 'pip'
          python-version: "3.x"
      - run: python -m pip install setuptools_scm
      - run: python -c "from setuptools_scm import get_version; print(get_version()); open('histomicstk/_version.py', 'w').write(f'__version__ = {str(get_version()).split('+')[0]!r}\n')"
      - run: cat histomicstk/_version.py
      - shell: bash
        run: |
          sed -i.bak -E \
            -e '/^dynamic = \["version"\]/d' \
            -e '/^\[project\]/a\
          version = "'"$(sed -nE "s/__version__ = ['\"](.*)['\"]/\\1/p" histomicstk/_version.py)"'"' \
            pyproject.toml
      - run: cat pyproject.toml
      - name: Set up QEMU
        if: runner.os == 'Linux'
        uses: docker/setup-qemu-action@v4
 
      - name: Build wheels
        uses: pypa/cibuildwheel@v4.1.0
        env:
          CIBW_BUILD: ${{ matrix.python }}-*
          CIBW_TEST_SKIP: "*-macosx_arm64"
          CIBW_ARCHS: ${{ matrix.buildplat[1] }}
          MACOSX_DEPLOYMENT_TARGET: "11.0"
 
      - uses: actions/upload-artifact@v7
        with:
          name: dist-${{ matrix.python }}-${{ startsWith(matrix.buildplat[1], 'macosx') && 'macosx' || matrix.buildplat[1] }}
          path: ./wheelhouse/*.whl
  make_sdist:
    timeout-minutes: 30
    name: Make SDist
    runs-on: latchkey-small
    steps:
    - uses: actions/checkout@v7
      with:
        fetch-depth: 0
        fetch-tags: true
    - run: git status && git tag --list && pwd
    - uses: actions/setup-python@v6
      with:
        cache: 'pip'
        python-version: "3.x"
    - run: python -m pip install setuptools_scm
    - run: python -c "from setuptools_scm import get_version; print(get_version()); open('histomicstk/_version.py', 'w').write(f'__version__ = {str(get_version()).split('+')[0]!r}\n')"
    - run: cat histomicstk/_version.py
    - shell: bash
      run: |
        sed -i.bak -E \
          -e '/^dynamic = \["version"\]/d' \
          -e '/^\[project\]/a\
        version = "'"$(sed -nE "s/__version__ = ['\"](.*)['\"]/\\1/p" histomicstk/_version.py)"'"' \
          pyproject.toml
    - run: cat pyproject.toml
    - name: Build SDist
      run: pipx run build --sdist
    - uses: actions/upload-artifact@v7
      with:
        name: dist-sdist
        path: dist/*.tar.gz
 
  # Still on Circle-CI
  #   - docker
  #   - publish-docker
  #   - docs-deploy
 
  test-release:
    timeout-minutes: 30
    runs-on: latchkey-small
    needs:
      - lint
      - build_wheels
      - make_sdist
    steps:
      - uses: actions/download-artifact@v8
        with:
          path: dist
          pattern: dist-*
          merge-multiple: true
      - name: List dist directory
        run: ls dist
 
  release:
    timeout-minutes: 30
    runs-on: latchkey-small
    needs:
      - test
      - lint
      - build_wheels
      - make_sdist
    if: github.repository == 'DigitalSlideArchive/HistomicsTK' && ( startsWith(github.ref, 'refs/tags/v') || github.ref == 'refs/heads/master' )
    environment:
      name: pypi
      url: https://pypi.org/p/histomicstk
    permissions:
      id-token: write
    steps:
      - uses: actions/download-artifact@v8
        with:
          path: dist
          pattern: dist-*
          merge-multiple: true
      - name: List dist directory
        run: ls dist
      - uses: pypa/gh-action-pypi-publish@release/v1